Tumebacillus
| Tumebacillus | |
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| Genus: | Tumebacillus Steven et al. 2008
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| Type species | |
| Tumebacillus permanentifrigoris Steven et al. 2008
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Tumebacillus is a genus of Gram-positive, rod-shaped, spore-forming bacteria. Members of the genus can be motile or non-motile,[1] and form white or yellow colonies on R2A agar.[2]
The genus was first proposed in 2008 from the discovery of a potentially 5000-7000 year-old bacterium from Canadian high arctic permafrost, which would become the type strain of the genus T. permanentifrigoris. The genus name was derived from Latin tume (from tumefacere, to make swollen) and bacillus (small rod), referring to the swollen sporangia produced by T. permanentifrigoris and the shape of the cells.[3]
Members of this genus have been isolated from arctic permafrost, soil samples, cassava wastewater, decomposing algal scum, river water, and the gut of a vulture.[1] Tumebacillus was found during surveys of nasal airways of infants, an underground subway in Norway, and a mountain observatory in Austria.[4][5][6]
Phylogeny[edit]
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[7] and National Center for Biotechnology Information (NCBI)[8]
| 16S rRNA based LTP_08_2023[9][10][11] | 120 marker proteins based GTDB 08-RS214[12][13][14] | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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See also[edit]
References[edit]
- ^ a b Sung, Hojun; Kim, Hyun Sik; Lee, June-Young; Kang, Woorim; Kim, Pil Soo; Hyun, Dong-Wook; Tak, Euon Jung; Jung, Mi-Ja; Yun, Ji-Hyun; Kim, Min-Soo; Shin, Na-Ri; Whon, Tae Woong; Rho, Jeong Rae; Park, Sun Duk; Shim, Hyung Eun; Bae, Jin-Woo (1 May 2018). "Tumebacillus avium sp. nov., isolated from the gut of a cinereous vulture, Aegypius monachus". International Journal of Systematic and Evolutionary Microbiology. 68 (5): 1659–1664. doi:10.1099/ijsem.0.002725. PMID 29561257.
- ^ Kim, Jong-Hwa; Kim, Wonyong (10 June 2016). "Tumebacillus soli sp. nov., isolated from non-rhizosphere soil". International Journal of Systematic and Evolutionary Microbiology. 66 (6): 2192–2197. doi:10.1099/ijsem.0.001009. PMID 26956136. S2CID 23782243.
- ^ Steven, B.; Chen, M. Q.; Greer, C. W.; Whyte, L. G.; Niederberger, T. D. (1 June 2008). "Tumebacillus permanentifrigoris gen. nov., sp. nov., an aerobic, spore-forming bacterium isolated from Canadian high Arctic permafrost". International Journal of Systematic and Evolutionary Microbiology. 58 (6): 1497–1501. doi:10.1099/ijs.0.65101-0. PMID 18523202. S2CID 24068730.
- ^ Hasegawa, Kohei; Linnemann, Rachel W.; Mansbach, Jonathan M.; Ajami, Nadim J.; Espinola, Janice A.; Petrosino, Joseph F.; Piedra, Pedro A.; Stevenson, Michelle D.; Sullivan, Ashley F.; Thompson, Amy D.; Camargo, Carlos A. (November 2017). "Nasal Airway Microbiota Profile and Severe Bronchiolitis in Infants". The Pediatric Infectious Disease Journal. 36 (11): 1044–1051. doi:10.1097/INF.0000000000001500. PMC 5479744. PMID 28005692.
- ^ Dybwad, Marius; Granum, Per Einar; Bruheim, Per; Blatny, Janet Martha (15 March 2012). "Characterization of Airborne Bacteria at an Underground Subway Station". Applied and Environmental Microbiology. 78 (6): 1917–1929. doi:10.1128/AEM.07212-11. PMC 3298144. PMID 22247150.
- ^ Els, Nora; Larose, Catherine; Baumann-Stanzer, Kathrin; Tignat-Perrier, Romie; Keuschnig, Christoph; Vogel, Timothy M.; Sattler, Birgit (4 September 2019). "Microbial composition in seasonal time series of free tropospheric air and precipitation reveals community separation". Aerobiologia. 35 (4): 671–701. doi:10.1007/s10453-019-09606-x.
- ^ A.C. Parte; et al. "Tumebacillus". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2022-09-09.
- ^ Sayers; et al. "Tumebacillus". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2022-09-09.
- ^ "The LTP". Retrieved 20 November 2023.
- ^ "LTP_all tree in newick format". Retrieved 20 November 2023.
- ^ "LTP_08_2023 Release Notes" (PDF). Retrieved 20 November 2023.
- ^ "GTDB release 08-RS214". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "bac120_r214.sp_label". Genome Taxonomy Database. Retrieved 10 May 2023.
- ^ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2023.