Andres Jaramillo-Botero

From Wikipedia, the free encyclopedia
Andres Jaramillo-Botero
Born1964 (age 59–60)
Cali, Colombia
NationalityColombian, American (since 2011)
Alma mater
Known forNanotechnology
Molecular modeling
Robotics
SpouseMaria Claudia Ojeda
Scientific career
FieldsNanotechnology
Computational Chemistry
Physical Chemistry
Electrical Engineering
InstitutionsCalifornia Institute of Technology
Pontifical Xavierian University
Doctoral advisorAlfons Crespo
William A. Goddard III

Andres Jaramillo-Botero (born March 28, 1964) is a Colombian-American scientist and professor, working in nanoscale chemical physics, known for his contributions to first-principles based modeling,[1][2] design, synthesis and characterization of nanostructured materials[3][4] and devices.[5][6]

Education and training[edit]

Jaramillo-Botero earned a B.S. in Electrical Engineering from Boston University in 1986, an M.Sc. in Computer Science from the State University of New York as a Fulbright scholar in 1989, under the supervision of Kanad Ghose and Peter Kogge, and a Doctorate degree in engineering from the Polytechnic University of Valencia (UPV) in 1998 (Valencia, Spain), under the supervision of Alfons Crespo (at UPV) and co-supervision of William A. Goddard III (at Caltech). His doctoral work, developed while at the California Institute of Technology and NASA's Jet Propulsion Laboratory, during 1996–1997, contributed time-lower bound solution and algorithms to the n-body dynamics problem and their application at multiple length scales, from molecular[7] to macroscopic systems.[8]

Career[edit]

Jaramillo-Botero began his academic career as an assistant professor in engineering and applied sciences at the Pontifical Xavierian University in 1990, where he reached full professorship by 1999. Since his early days at this institution, he served in various positions such as Engineering Faculty Dean (1998-2004), member of the university’s board of directors, founding Director of the Doctoral program in Engineering and Applied Sciences, founding director of the electronics engineering undergraduate program, and director of the computer science undergraduate program. In 2001, Jaramillo-Botero was received into the Xavierian honor society for his contributions to science and academia in Colombia.[9]

In early 2006, he joined the California Institute of Technology (Caltech) full-time, and relocated to the US as an Alien of extraordinary ability recipient (EB-1A category). At Caltech, he holds key positions as a Scientist-Lecturer in the Chemistry and Chemical Engineering division, and as the Director of Nanotechnology and Multiscale Science[10] in the Materials and Process Simulation Center.[11] He remains a full distinguished professor in engineering and science and was recently selected as a member of the Board of Regents [12] at the Pontifical Xavierian University in Colombia.

Research Work[edit]

Jaramillo-Botero developed an early interest for multibody dynamics control as a research scholar (1992-1993) in Advanced Industrial Applications at the Robotics and Autonomous Machinery division of the Mechanical Engineering Laboratory (part of the National Institute of Advanced Industrial Science and Technology or AIST), where he focused on dynamic real-time visual control of robotic systems. He transitioned from macroscopic to nanoscale multibody dynamics control and modeling during his research appointment with NASA’s Jet Propulsion Laboratory and Caltech (1996-1997). He continued to develop fundamental frameworks for designing atomic-scale manipulators with optimized dynamic response during postdoctoral appointments (2002 -2005), as a National Science Foundation (NSF) Fellow in the Nanoscale Science and Engineering program,[13] at UCLA’s Institute for Pure and Applied Mathematics (IPAM), and, as an NSF Fellow in Computational Nanotechnology and Molecular Engineering, at Caltech.[14][15]

Jaramillo-Botero is recognized for the development and application of first-principles based physicochemical methods to study and elucidate nanoscale phenomena, particularly involving dynamics under extreme conditions, and to design, characterize, synthesize and optimize nanostructured materials, devices and systems.

His contributions span multiple fields of study, including: molecular hypervelocity impact phenomena in space missions,[16][17][18] dynamics of materials in extreme conditions (non-adiabatic behavior),[19][20] first-principles based atomistic and coarse-grain force fields and simulation methods to study complex chemical processes,[21][22] some of which are embedded in widely used open source codes like LAMMPS,[23] low-temperature crystalline thin film growth and characterization,[24][25][26] single-molecule sensing and actuation nanodevices, [27][28][5][6][7] and computational dynamics methods in large-scale multi body systems (from atomistic to continuum).[15][29][30][31]

Jaramillo-Botero led the OMICAS Alliance as Scientific Director, [32] an international, multi-institutional research effort spurred in 2018 by the Colombian government under the World Bank PACES program [33] to address food security and sustainable productivity, via Omics characterization and optimization of plant organisms.[34] As a result of the Alliance’s contributions to omics characterization and optimization of organisms, Jaramillo-Botero led the creation of the OMICAS Research Institute - iOMICAS [35] at the Pontifical Xavierian University in Cali; a state of the art facility in omics science, focused on translational research solutions for overarching challenges associated to human and plant health, food security, and productive sustainability.

Personal life[edit]

Jaramillo-Botero was raised, along with three siblings, to parents Jorge Jaramillo-Douat and Clara Ines Botero. Jaramillo-Botero is married to Maria Claudia Ojeda. They bore two children, Tomas (2004-) and Lucas (2000–2009).

U.S. Patents[edit]

He holds multiple US and European patents as of 2016.[36]

References[edit]

  1. ^ "LAMMPS Authors". Sandia National Laboratory. Retrieved October 27, 2016.
  2. ^ "The GARFfield Multi-Objective Force Field Optimization framework". Sandia National Laboratory. Retrieved October 27, 2016.
  3. ^ Kirchner, Barbara; Vrabec, Jadran (January 18, 2012). Multiscale Molecular Methods in Applied Chemistry. Topics in Current Chemistry. Vol. 307. pp. 1–42. doi:10.1007/978-3-642-24968-6. ISBN 978-3-642-24967-9. PMID 21243466. S2CID 92956966.
  4. ^ CRC handbook of Nanoscience, Engineering and Technology. CRC Press. Retrieved October 27, 2016.
  5. ^ a b United States granted US9234882 B2, Andres Jaramillo-Botero and William A. Goddard III, "Translocation and Nucleotide Reading Mechanisms for Sequencing Nanodevices (linear shuttle)", published 2015-04-16, issued 2016-01-12 
  6. ^ a b United States granted US9090936 B2, Andres Jaramillo-Botero and William A. Goddard III, "Using a Field Effect Device for Identifying Translocating Charge-Tagged Molecules in A Nanopore Sequencing Device", published 2013-03-21, issued 2015-07-28 
  7. ^ a b Jaramillo-Botero, Andres (January 6, 1998). "Molecular Mechanics and Molecular Dynamics Analysis of Drexler-Merkle Gears and Neon Pump". Nanotechnology. 9 (3): 143–152. Bibcode:1998Nanot...9..143C. CiteSeerX 10.1.1.34.5553. doi:10.1088/0957-4484/9/3/002. S2CID 250921944.
  8. ^ "LAMMPS". lammps.sandia.gov. Sandia National Laboratory. Retrieved October 27, 2016.
  9. ^ "ETHOS Pontificia Universidad Javeriana". Pontificia Universidad Javeriana. 2 March 2017. Retrieved April 16, 2024.
  10. ^ "Multiscale Science and Simulation, Materials and Process Simulation Center, Caltech". Retrieved 2016-10-01.
  11. ^ "Materials and Process Simulation Center, Caltech". Retrieved 2016-10-01..
  12. ^ "Governing Body, Pontificia Universidad Javeriana". Pontificia Universidad Javeriana. Retrieved April 16, 2024.
  13. ^ "IPAM 2002 Nanoscale Science and Engineering Program". Institute of Pure and Applied Mathematics. 13 May 2014. Retrieved October 27, 2016.
  14. ^ "Pan American Advanced Studies Institute in Computational Nanotechnology and Molecular Engineering". National Science Foundation. Retrieved October 27, 2016.
  15. ^ a b Schwarz, James; Contescu, Christian; Putyera, Karol (June 15, 2014). "Molecular Manipulator Dynamics Design Criteria". Dekker Encyclopedia of Nanoscience and Nanotechnology: 2692–2702. doi:10.1081/E-ENN3-120024165. ISBN 978-1-4398-9134-6.
  16. ^ Jaramillo-Botero, Andres; Cable, Morgan; Hofmann, Amy; Malaska, III, Michael; Hodyss, Robert; Lunine, Jonathan (2021). "Understanding hypervelocity sampling of biosignatures in space missions". Astrobiology. 21 (4): 421–442. Bibcode:2021AsBio..21..421J. doi:10.1089/ast.2020.2301. PMC 7994429. PMID 33749334.
  17. ^ Jaramillo-Botero, Andres; An, Qi; Cheng, Mu-Jeng; Goddard, III, William A.; Beegle, Luther W.; Hodyss, Robert (2012). "Hypervelocity impact effect of molecules from Enceladus' Plume and Titan's upper atmosphere on NASA's Cassini Spectrometer from Reactive Dynamics Simulations" (PDF). Physical Review Letters. 109 (21): 213201. Bibcode:2012PhRvL.109u3201J. doi:10.1103/PhysRevLett.109.213201. PMID 23215593.
  18. ^ Darrach, Murray; Madzunkov, Stojan; Schaefer, Rembrandt; Nikolic, Dragan; Simcic, Jurij; Kidd, Richard; Neidholdt, Evan; Pilinski, Marcin; Jaramillo-Botero, Andres; Farley, Keneth (2015-03-07). "The Mass Analyzer for Real-time Investigation of Neutrals at Europa (MARINE)" (PDF). 2015 IEEE Aerospace Conference. pp. 1–13. doi:10.1109/AERO.2015.7119017. ISBN 978-1-4799-5379-0. S2CID 25239789.
  19. ^ Xiao, Hai; Jaramillo-Botero, Andres; Theofanis, Patrick; Goddard, III, William A. (November 2015). "Non-adiabatic dynamics modeling framework for materials in extreme conditions". Mechanics of Materials. 90: 243–252. doi:10.1016/j.mechmat.2015.02.008.
  20. ^ Theofranis, Patrick; Jaramillo-Botero, Andres; Goddard, III, William A. (January 2012). "Non-adiabatic study of dynamic electronic effects during brittle fracture in silicon". Physical Review Letters. 108 (4): 045501. Bibcode:2012PhRvL.108d5501T. doi:10.1103/PhysRevLett.108.045501. PMID 22400860.
  21. ^ Cheng, Tao; Jaramillo-Botero, Andres; Goddard, III, William A.; Sun, Huai (June 2, 2014). "Adaptive Accelerated ReaxFF Reactive Dynamics with Validation from Simulating Hydrogen Combustion" (PDF). Journal of the American Chemical Society. 136 (26): 9434–9442. doi:10.1021/ja5037258. PMID 24885152. S2CID 23057155.
  22. ^ Jaramillo-Botero, Andres; Naserifar, Saber; Goddard, III, William A. (March 18, 2014). "A General Multi-objective Force Field Optimization Framework, with Application to Reactive Force Fields for Silicon Carbide" (PDF). Journal of Chemical Theory and Computation. 10 (4): 1426–1439. doi:10.1021/ct5001044. PMID 26580361.
  23. ^ "LAMMPS Authors". Sandia National Laboratory. Retrieved October 27, 2016.
  24. ^ An, Qi; Cheng, Mu-Jeng; Goddard, III, William A.; Jaramillo-Botero, Andres (January 13, 2014). "CCl Radicals As a Carbon Source for Diamond Thin Film Deposition". Journal of Physical Chemistry Letters. 5 (3): 481–484. doi:10.1021/jz402527y. PMID 26276595.
  25. ^ An, Qi; Jaramillo-Botero, Andres; Liu, Wei-Guang; Goddard, III, William A. (February 4, 2015). "Reaction Pathways of GaN (0001) Growth from Trimethylgallium and Ammonia versus Triethylgallium and Hydrazine Using First Principle Calculations". Journal of Physical Chemistry C. 119 (8): 4095–4103. doi:10.1021/jp5116405.
  26. ^ Peng, Siying; Sheldon, Matthew; Liu, Wei-Guang; Jaramillo-Botero, Andres (January 12, 2015). "Ultraviolet surface plasmon-mediated low temperature hydrazine decomposition" (PDF). Applied Physics Letters. 106 (2): 023102. Bibcode:2015ApPhL.106b3102P. doi:10.1063/1.4905593.
  27. ^ Perdomo, Sammy; De la Paz, Ernesto; Del Caño, Rafael; Sumeyye Seker, Sumeyye; Saha, Tamoghna; Wang, Joseph; Jaramillo-Botero, Andres (1 July 2024). "Non-invasive in-vivo glucose-based stress monitoring in plants". Biosensors and Bioelectronics. 231: 115300. doi:10.1016/j.bios.2023.115300.
  28. ^ Nidzworski, Dawid; Siuzdak, Kararzyna; et, III, al. (November 16, 2017). "A rapid-response ultrasensitive biosensor for influenza virus detection using antibody modified boron-doped diamond". Scientific Reports. 7 (1): 15707. Bibcode:2017NatSR...715707N. doi:10.1038/s41598-017-15806-7. PMC 5691202. PMID 29146948. S2CID 256913539.
  29. ^ Jaramillo-Botero, Andres; Crespo, Alfons (January 2002). "A Unified Formulation For Massively Parallel Rigid Multibody Dynamics Of O(Log2 N) Computational Complexity". Journal of Parallel and Distributed Computing. 62 (6): 1001–1020. doi:10.1006/jpdc.2001.1820.
  30. ^ Fijany, Antal; Cagin, Tahir (January 2002). "Novel Algorithms for massively parallel, long term simulation of molecular dynamics systems". Advances in Engineering Software. 29 (3–6): 441–450. doi:10.1016/S0965-9978(98)00053-2.
  31. ^ Jaramillo-Botero, Andres; Matta, Antonio; Correa, Juan Fernando; Perea, Wilmer (December 2006). "ROBOMOSP: Robot Modeling and Simulation Platform". IEEE Robotics and Automation. 13 (4): 62–73. doi:10.1109/MRA.2006.250572. S2CID 218681540.
  32. ^ "OMICAS Alliance".
  33. ^ "World Bank PACES program". World Bank. Retrieved April 15, 2024.
  34. ^ Jaramillo-Botero, A.; Colorado, J.D.; Quimbaya, M.A.; Rebolledo, M.C.; Lorieux, M.; Ghneim-Herrera, T.; Arango, C.A.; Tobon, L.E.; Finke, J.; Rocha, C.; Munoz, F.; Riascos, J.J.; Silva, F.; Chirinda, N.; Caccamo, M.; Vandepoele, K.; Goddard, III, W.A. (2022). "The ÓMICAS alliance, an international research program on multi-omics for crop breeding optimization". Front. Plant Sci. 13: 992663. doi:10.3389/fpls.2022.992663. PMC 9614048. PMID 36311093.
  35. ^ "iOMICAS Research Institute". Pontifical Xaverian University. Retrieved April 15, 2024.
  36. ^ "Jaramillo-Botero - United States". Justia patents. United States Patent and Trademark Office. Retrieved Aug 20, 2014.
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